| CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences EFO Sandes, ACMA de Melo Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 2010 | 92 | 2010 |
| CUDAlign 4.0: Incremental speculative traceback for exact chromosome-wide alignment in GPU clusters EF de Oliveira Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... IEEE Transactions on Parallel and Distributed Systems 27 (10), 2838-2850, 2016 | 87 | 2016 |
| Retrieving smith-waterman alignments with optimizations for megabase biological sequences using GPU EFO Sandes, ACMA de Melo IEEE Transactions on Parallel and Distributed Systems 24 (5), 1009-1021, 2012 | 85 | 2012 |
| Smith-waterman alignment of huge sequences with gpu in linear space EFO Sandes, ACMA de Melo 2011 IEEE International Parallel & Distributed Processing Symposium, 1199-1211, 2011 | 66 | 2011 |
| CUDAlign 3.0: Parallel biological sequence comparison in large GPU clusters EFO Sandes, G Miranda, ACMA de Melo, X Martorell, E Ayguadé 2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2014 | 42 | 2014 |
| Parallel optimal pairwise biological sequence comparison: Algorithms, platforms, and classification EFDO Sandes, A Boukerche, ACMAD Melo ACM Computing Surveys (CSUR) 48 (4), 1-36, 2016 | 34 | 2016 |
| MASA: A multiplatform architecture for sequence aligners with block pruning EF De O. Sandes, G Miranda, X Martorell, E Ayguade, G Teodoro, ... ACM Transactions on Parallel Computing (TOPC) 2 (4), 1-31, 2016 | 32 | 2016 |
| An exact parallel algorithm to compare very long biological sequences in clusters of workstations A Boukerche, ACMA de Melo, EFO Sandes, M Ayala-Rincon Cluster Computing 10 (2), 187-202, 2007 | 23 | 2007 |
| Logical model of relationship for online social networks and performance optimizing of queries: WISE 2012 challenge-T1: performance track scalability winner EFO De Sandes, L Weigang, ACMA de Melo International Conference on Web Information Systems Engineering, 726-736, 2012 | 18 | 2012 |
| Querying dynamic communities in online social networks L Weigang, EFO Sandes, J Zheng, ACMA de Melo, L Uden Journal of Zhejiang University Science C 15 (2), 81-90, 2014 | 15 | 2014 |
| Bioinformatics of the Paracoccidioides brasiliensis EST Project MM Brígido, MEMT Walter, AG Oliveira, MK Inoue, DS Anjos, EFO Sandes, ... FUNPEC-RP, 2005 | 15 | 2005 |
| DNA sequences alignment in multi-GPUs: acceleration and energy payoff J Pérez-Serrano, E Sandes, AC Magalhaes Alves de Melo, M Ujaldón BMC bioinformatics 19 (Suppl 14), 421, 2018 | 12 | 2018 |
| Formalization of block pruning: Reducing the number of cells computed in exact biological sequence comparison algorithms EFO Sandes, GLM Teodoro, MEMT Walter, X Martorell, E Ayguade, ... The Computer Journal 61 (5), 687-713, 2018 | 12 | 2018 |
| Parallel fine-grained comparison of long DNA sequences in homogeneous and heterogeneous GPU platforms with pruning M Figueiredo, JP Navarro, EFO Sandes, G Teodoro, ACMA Melo IEEE Transactions on Parallel and Distributed Systems 32 (12), 3053-3065, 2021 | 10 | 2021 |
| de Melo. CUD-Align: using GPU to accelerate the comparison of megabase genomic sequences EFO Sandes, MA Alba Cristina Proceedings of the 15th ACM SIGPLAN symposium on Principles and practice of …, 0 | 9 | |
| An agent-based solution for dynamic multi-node wavefront balancing in biological sequence comparison EFO Sandes, CG Ralha, ACMA de Melo Expert Systems with Applications 41 (10), 4929-4938, 2014 | 8 | 2014 |
| Fine-grain parallel megabase sequence comparison with multiple heterogeneous GPUs EF de O. Sandes, G Miranda, ACMA Melo, X Martorell, E Ayguade Proceedings of the 19th ACM SIGPLAN symposium on Principles and practice of …, 2014 | 8 | 2014 |
| Bitmap filter: Speeding up exact set similarity joins with bitwise operations EFO Sandes, GLM Teodoro, ACMA Melo Information Systems 88, 101449, 2020 | 7 | 2020 |
| Smith-waterman acceleration in multi-gpus: a performance per watt analysis J Pérez Serrano, EF De Oliveira Sandes, AC Magalhaes Alves de Melo, ... International Conference on Bioinformatics and Biomedical Engineering, 512-523, 2017 | 6 | 2017 |
| Algoritmos Paralelos Exatos e Otimizações para Alinhamento de Sequências Biológicas Longas em Plataformas de Alto Desempenho EFO Sandes, A Melo Tese (Doutorado), Departamento de Ciência da Computação, Universidade de …, 2015 | 5 | 2015 |
