| 3D chromatin architecture of large plant genomes determined by local A/B compartments P Dong, X Tu, PY Chu, P Lü, N Zhu, D Grierson, B Du, P Li, S Zhong Molecular Plant 10 (12), 1497-1509, 2017 | 337 | 2017 |
| Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors X Tu, MK Mejía-Guerra, JA Valdes Franco, D Tzeng, PY Chu, W Shen, ... Nature Communications 11, 5089, 2020 | 204 | 2020 |
| Tissue‐specific Hi‐C analyses of rice, foxtail millet and maize suggest non‐canonical function of plant chromatin domains P Dong, X Tu, H Li, J Zhang, D Grierson, P Li, S Zhong Journal of Integrative Plant Biology 62 (2), 201-217, 2020 | 78 | 2020 |
| Identification of photosynthesis-associated C4 candidate genes through comparative leaf gradient transcriptome in multiple lineages of C3 and C4 species Z Ding, S Weissmann, M Wang, B Du, L Huang, L Wang, X Tu, S Zhong, ... PLoS One 10, e0140629, 2015 | 71 | 2015 |
| Limited conservation in cross-species comparison of GLK transcription factor binding suggested wide-spread cistrome divergence X Tu, S Ren, W Shen, J Li, Y Li, C Li, Y Li, Z Zong, W Xie, D Grierson, ... Nature Communications 13, 7632, 2022 | 53 | 2022 |
| Plant and animal chromatin three-dimensional organization: similar structures but different functions P Dong, X Tu, Z Liang, BH Kang, S Zhong Journal of Experimental Botany 71 (17), 5119-5128, 2020 | 52 | 2020 |
| Characterization of regulatory modules controlling leaf angle in maize X Wang, X Wang, S Sun, X Tu, K Lin, L Qin, X Wang, G Li, S Zhong, P Li Plant Physiology 190 (1), 500-515, 2022 | 34 | 2022 |
| Chromatin and regulatory differentiation between bundle sheath and mesophyll cells in maize X Dai, X Tu, B Du, P Dong, S Sun, X Wang, J Sun, G Li, T Lu, S Zhong, ... The Plant Journal 109 (3), 675-692, 2022 | 30 | 2022 |
| Investigating the cis-regulatory basis of C3 and C4 photosynthesis in grasses at single-cell resolution JP Mendieta, X Tu, D Jiang, H Yan, X Zhang, AP Marand, S Zhong, ... Proceedings of the National Academy of Sciences of the United States of …, 2024 | 23 | 2024 |
| Histone H2A monoubiquitination marks are targeted to specific sites by cohesin subunits in Arabidopsis Y Zhang, M Ma, M Liu, A Sun, X Zheng, K Liu, C Yin, C Li, C Jiang, X Tu, ... Nature Communications 14, 1209, 2023 | 17 | 2023 |
| A combinatorial indexing strategy for low-cost epigenomic profiling of plant single cells X Tu, AP Marand, RJ Schmitz, S Zhong Plant Communications 3 (4), 100308, 2022 | 17 | 2022 |
| Feedback regulation of auxin signaling through the transcription of H2A. Z and deposition of H2A. Z to SMALL AUXIN UP RNAs in Arabidopsis A Sun, C Yin, M Ma, Y Zhou, X Zheng, X Tu, Y Fang New Phytologist 236 (5), 1721-1733, 2022 | 15 | 2022 |
| Evolution of cell-type-specific accessible chromatin regions and the cis-regulatory elements that drive lineage-specific innovation H Yan, JP Mendieta, X Zhang, AP Marand, Y Liang, Z Luo, T Roulé, ... | 14* | 2024 |
| Non-homology-based prediction of gene functions in maize (Zea mays ssp. mays) X Dai, Z Xu, Z Liang, X Tu, S Zhong, J Schnable, P Li Plant Genome 13 (2), e20015, 2020 | 11 | 2020 |
| A NAC transcription factor and a MADS-box protein antagonistically regulate sucrose accumulation in strawberry receptacles K Xiao, J Fan, X Bi, X Tu, X Li, M Cao, Z Liu, A Lin, C Wang, P Xu, H Lian Plant Physiology 197 (3), kiaf043, 2025 | 10 | 2025 |
| A single-cell rice atlas integrates multi-species data to reveal cis-regulatory evolution H Yan, JP Mendieta, X Zhang, Z Luo, AP Marand, Y Liang, MAA Minow, ... Nature Plants 11 (10), 2050-2071, 2025 | 2 | 2025 |
| Genetic effects on chromatin accessibility reveal the molecular mechanisms of complex traits in maize Y Zhu, H Ngan, W Liu, T Zhu, W Li, Y Xiao, L Zhuo, D Chen, X Tu, K Gao, ... The Plant Journal 123 (4), e70437, 2025 | 2 | 2025 |
| Vegetative to generative1 (Vgt1) is an enhancer affecting flowering time and jasmonate signaling in maize by promoting the expression of Zea mays Related to APETALA 2.7 J Zicola, B Weber, X Tu, R Bader, D Zisis, S Aesaert, S Salvi, P Krajewski, ... Plant Physiology 199 (3), kiaf468, 2025 | 1 | 2025 |
| Author Correction: Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors X Tu, MK Mejía-Guerra, JAV Franco, D Tzeng, PY Chu, W Shen, Y Wei, ... Nature Communications 14, 1586, 2023 | 1 | 2023 |
| From Natural Discovery to AI-Guided Design: A Curated Collection of Compact Enhancers for Crop Engineering Q Yao, J Gao, K Wang, Y Liu, P Han, H Pan, X Yang, Q Yin, D Zhong, ... Advanced science, e16600, 2026 | | 2026 |
