| Robust enumeration of cell subsets from tissue expression profiles AM Newman, CL Liu, MR Green, AJ Gentles, W Feng, Y Xu, CD Hoang, ... Nature methods 12 (5), 453-457, 2015 | 12425 | 2015 |
| The immune landscape of cancer V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ... Immunity 48 (4), 812-830. e14, 2018 | 5757 | 2018 |
| Determining cell type abundance and expression from bulk tissues with digital cytometry AM Newman, CB Steen, CL Liu, AJ Gentles, AA Chaudhuri, F Scherer, ... Nature biotechnology 37 (7), 773-782, 2019 | 4151 | 2019 |
| The prognostic landscape of genes and infiltrating immune cells across human cancers AJ Gentles, AM Newman, CL Liu, SV Bratman, W Feng, D Kim, VS Nair, ... Nature medicine 21 (8), 938-945, 2015 | 3362 | 2015 |
| Machine learning identifies stemness features associated with oncogenic dedifferentiation TM Malta, A Sokolov, AJ Gentles, T Burzykowski, L Poisson, JN Weinstein, ... Cell 173 (2), 338-354. e15, 2018 | 2145 | 2018 |
| The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors SB Willingham, JP Volkmer, AJ Gentles, D Sahoo, P Dalerba, SS Mitra, ... Proceedings of the National Academy of Sciences 109 (17), 6662-6667, 2012 | 1951 | 2012 |
| Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor O Kohany, AJ Gentles, L Hankus, J Jurka BMC bioinformatics 7 (1), 474, 2006 | 1009 | 2006 |
| Calreticulin is the dominant pro-phagocytic signal on multiple human cancers and is counterbalanced by CD47 MP Chao, S Jaiswal, R Weissman-Tsukamoto, AA Alizadeh, AJ Gentles, ... Science translational medicine 2 (63), 63ra94-63ra94, 2010 | 950 | 2010 |
| Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 816 | 2007 |
| Transient rest restores functionality in exhausted CAR-T cells through epigenetic remodeling EW Weber, KR Parker, E Sotillo, RC Lynn, H Anbunathan, J Lattin, ... Science 372 (6537), eaba1786, 2021 | 621 | 2021 |
| A simple method for estimating interactions between a treatment and a large number of covariates L Tian, AA Alizadeh, AJ Gentles, R Tibshirani Journal of the American Statistical Association 109 (508), 1517-1532, 2014 | 533 | 2014 |
| Association of a leukemic stem cell gene expression signature with clinical outcomes in acute myeloid leukemia AJ Gentles, SK Plevritis, R Majeti, AA Alizadeh Jama 304 (24), 2706-2715, 2010 | 504 | 2010 |
| Mutations in early follicular lymphoma progenitors are associated with suppressed antigen presentation MR Green, S Kihira, CL Liu, RV Nair, R Salari, AJ Gentles, J Irish, H Stehr, ... Proceedings of the National Academy of Sciences 112 (10), E1116-E1125, 2015 | 424 | 2015 |
| Hierarchy in somatic mutations arising during genomic evolution and progression of follicular lymphoma MR Green, AJ Gentles, RV Nair, JM Irish, S Kihira, CL Liu, I Kela, ... Blood, The Journal of the American Society of Hematology 121 (9), 1604-1611, 2013 | 394 | 2013 |
| Prospective separation of normal and leukemic stem cells based on differential expression of TIM3, a human acute myeloid leukemia stem cell marker M Jan, MP Chao, AC Cha, AA Alizadeh, AJ Gentles, IL Weissman, ... Proceedings of the National Academy of Sciences 108 (12), 5009-5014, 2011 | 373 | 2011 |
| Multimodal data fusion for cancer biomarker discovery with deep learning S Steyaert, M Pizurica, D Nagaraj, P Khandelwal, T Hernandez-Boussard, ... Nature machine intelligence 5 (4), 351-362, 2023 | 359 | 2023 |
| Role of KEAP1/NRF2 and TP53 Mutations in Lung Squamous Cell Carcinoma Development and Radiation Resistance Y Jeong, NT Hoang, A Lovejoy, H Stehr, AM Newman, AJ Gentles, ... Cancer discovery 7 (1), 86-101, 2017 | 355 | 2017 |
| Lymph node colonization induces tumor-immune tolerance to promote distant metastasis NE Reticker-Flynn, W Zhang, JA Belk, PA Basto, NK Escalante, ... Cell 185 (11), 1924-1942. e23, 2022 | 339 | 2022 |
| CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities K Han, SE Pierce, A Li, K Spees, GR Anderson, JA Seoane, YH Lo, ... Nature 580 (7801), 136-141, 2020 | 328 | 2020 |
| Atlas of clinically distinct cell states and ecosystems across human solid tumors BA Luca, CB Steen, M Matusiak, A Azizi, S Varma, C Zhu, J Przybyl, ... Cell 184 (21), 5482-5496. e28, 2021 | 307 | 2021 |
Ash A. Alizadeh, MD, PhDStanford University, Moghadam Family Professor of MedicineVerified email at stanford.edu
