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DNA Computing and Molecular Programming

15th International Meeting on DNA Computing, DNA 15, Fayetteville, AR, USA, June 8-11, 2009. Revised Selected Papers

  • Conference proceedings
  • © 2009

Overview

Editors:
  1. Russell Deaton

    1. Dept. of Computer Science and Computer Engineering, JBHT - CSCE 504, 1 University of Arkansas, Fayetteville, USA

  2. Akira Suyama

    1. Department of Life Science and Institute of Physics Graduate school of Arts and Sciences, The University of Tokyo, Tokyo, Japan

Part of the book series: Lecture Notes in Computer Science (LNCS, volume 5877)

Part of the book sub series: Theoretical Computer Science and General Issues (LNTCS)

Included in the following conference series:

Conference proceedings info: DNA 2009.

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About this book

This book constitutes the thoroughly refereed post-conference proceedings of the 15th International Meeting on DNA Computing, DNA15, held in Fayetteville, AR, USA, in June 2009. The 16 revised full papers presented were carefully selected during two rounds of reviewing and improvement from 38 submissions. The papers feature current interdisciplinary research in molecular-scale manipulation of matter - in particular, implementation of nanoscale computation and programmed assembly of materials are of interest, thus reflecting a broader scope beyond DNA-based nanotechnology and computation.

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Table of contents (16 papers)

  1. Front Matter

    Download chapter PDF

  2. Filter Position in Networks of Evolutionary Processors Does Not Matter: A Direct Proof

    • Paolo Bottoni, Anna Labella, Florin Manea, Victor Mitrana, Jose M. Sempere
    Pages 1-11

  3. Strand Algebras for DNA Computing

    • Luca Cardelli
    Pages 12-24

  4. A Domain-Specific Language for Programming in the Tile Assembly Model

    • David Doty, Matthew J. Patitz
    Pages 25-34

  5. Limitations of Self-assembly at Temperature One

    • David Doty, Matthew J. Patitz, Scott M. Summers
    Pages 35-44

  6. Advancing the Deoxyribozyme-Based Logic Gate Design Process

    • M. Leigh Fanning, Joanne Macdonald, Darko Stefanovic
    Pages 45-54

  7. DNA Chips for Species Identification and Biological Phylogenies

    • Max H. Garzon, Tit-Yee Wong, Vinhthuy Phan
    Pages 55-66

  8. Renewable, Time-Responsive DNA Logic Gates for Scalable Digital Circuits

    • Ashish Goel, Morteza Ibrahimi
    Pages 67-77

  9. Self-assembly of the Discrete Sierpinski Carpet and Related Fractals

    • Steven M. Kautz, James I. Lathrop
    Pages 78-87

  10. Automatic Design of DNA Logic Gates Based on Kinetic Simulation

    • Ibuki Kawamata, Fumiaki Tanaka, Masami Hagiya
    Pages 88-96

  11. Design of a Biomolecular Device That Executes Process Algebra

    • Urmi Majumder, John H. Reif
    Pages 97-105

  12. NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots

    • Ján Maňuch, Chris Thachuk, Ladislav Stacho, Anne Condon
    Pages 106-115

  13. The Effect of Malformed Tiles on Tile Assemblies within kTAM

    • Ya Meng, Navin Kashyap
    Pages 116-125

  14. Positional State Representation and Its Transition Control for Photonic DNA Automaton

    • Hiroto Sakai, Yusuke Ogura, Jun Tanida
    Pages 126-136

  15. Construction of AND Gate for RTRACS with the Capacity of Extension to NAND Gate

    • Yoko Sakai, Yoriko Mawatari, Kiyonari Yamasaki, Koh-ichiroh Shohda, Akira Suyama
    Pages 137-143

  16. Time-Complexity of Multilayered DNA Strand Displacement Circuits

    • Georg Seelig, David Soloveichik
    Pages 144-153

  17. Distributed Agreement in Tile Self-assembly

    • Aaron Sterling
    Pages 154-163

  18. Back Matter

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Other volumes

  1. DNA Computing and Molecular Programming

Editors and Affiliations

  • Dept. of Computer Science and Computer Engineering, JBHT - CSCE 504, 1 University of Arkansas, Fayetteville, USA

    Russell Deaton

  • Department of Life Science and Institute of Physics Graduate school of Arts and Sciences, The University of Tokyo, Tokyo, Japan

    Akira Suyama

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