8000 lxml_html_clean needs to be installed separately · Issue #50 · haesleinhuepf/devbio-napari · GitHub
[go: up one dir, main page]

Skip to content

lxml_html_clean needs to be installed separately #50

Open

Description

@haesleinhuepf

The following error can be fixed using pip install lxml_html_clean:

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
Cell In[1], line 1
----> 1 from napari_assistant._categories import CATEGORIES
      3 try:
      4     import pyclesperanto as cle

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\__init__.py:1](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/__init__.py#line=0)
----> 1 from ._gui import Assistant
      2 from .__main__ import main
      3 from ._viewer import Viewer

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_gui\__init__.py:1](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_gui/__init__.py#line=0)
----> 1 from ._Assistant import Assistant

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_gui\_Assistant.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_gui/_Assistant.py#line=8)
      7 from qtpy.QtGui import QCursor
      8 from typing import Union
----> 9 from .._categories import CATEGORIES, Category, filter_categories, find_function, get_category_of_function
     10 from ._button_grid import ButtonGrid, _get_highlight_brush, _get_background_brush
     11 from ._category_widget import make_gui_for_category

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari_assistant\_categories.py:6](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari_assistant/_categories.py#line=5)
      4 import numpy as np
      5 import napari
----> 6 from napari.layers import Image, Labels, Layer
      7 from typing_extensions import Annotated
      8 import inspect

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\__init__.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/layers/__init__.py#line=8)
      1 """Layers are the viewable objects that can be added to a viewer.
      2 
      3 Custom layers must inherit from Layer and pass along the
      4 `visual node <https://vispy.org/api/vispy.scene.visuals.html>`_
      5 to the super constructor.
      6 """
      7 import inspect as _inspect
----> 9 from napari.layers.base import Layer
     10 from napari.layers.image import Image
     11 from napari.layers.labels import Labels

File ~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\base\__init__.py:1
----> 1 from napari.layers.base._base_constants import ActionType
      2 from napari.layers.base.base import Layer, no_op
      4 __all__ = ['Layer', 'no_op', 'ActionType']

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\layers\base\_base_constants.py:4](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/layers/base/_base_constants.py#line=3)
      1 from collections import OrderedDict
      2 from enum import IntEnum, auto
----> 4 from napari.utils.misc import StringEnum
      5 from napari.utils.translations import trans
      8 class Blending(StringEnum):

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\utils\__init__.py:8](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/utils/__init__.py#line=7)
      2 from napari.utils.colormaps.colormap import (
      3     Colormap,
      4     CyclicLabelColormap,
      5     DirectLabelColormap,
      6 )
      7 from napari.utils.info import citation_text, sys_info
----> 8 from napari.utils.notebook_display import nbscreenshot
      9 from napari.utils.progress import cancelable_progress, progrange, progress
     11 __all__ = (
     12     'Colormap',
     13     'DirectLabelColormap',
   (...)
     21     'sys_info',
     22 )

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\napari\utils\notebook_display.py:9](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/napari/utils/notebook_display.py#line=8)
      7     from lxml.etree import ParserError
      8     from lxml.html import document_fromstring
----> 9     from lxml.html.clean import Cleaner
     11     lxml_unavailable = False
     12 except ModuleNotFoundError:

File [~\miniforge3\envs\devbio-napari-env\Lib\site-packages\lxml\html\clean.py:18](http://localhost:8888/lab/workspaces/auto-B/tree/docs/~/miniforge3/envs/devbio-napari-env/Lib/site-packages/lxml/html/clean.py#line=17)
      8     __all__ = [
      9         "clean_html",
     10         "clean",
   (...)
     15         "word_break_html",
     16     ]
     17 except ImportError:
---> 18     raise ImportError(
     19         "lxml.html.clean module is now a separate project lxml_html_clean[.\n](http://localhost:8888/lab/workspaces/auto-B/tree/docs/n)"
     20         "Install lxm
45AC
l[html_clean] or lxml_html_clean directly."
     21     ) from None

ImportError: lxml.html.clean module is now a separate project lxml_html_clean.
Install lxml[html_clean] or lxml_html_clean directly.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions

      0