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rnaVariantCalling high-quality SNPs for hg38 in documentation #578
Description
Hi there,
I am downloaded input files according to the documentation here: https://gagneurlab-drop.readthedocs.io/en/latest/prepare.html#files-to-download
For the high-quality variants, I can see there is one file for SNPs and one for INDELs for hg19, but for hg38 both files are for INDELs. Is there are particular reason for that?
Many thanks,
Yunkai
Activity
vyepez88 commentedon Sep 22, 2024
Hi Yunkai, for hg38, the files are downloadable here: https://gatk.broadinstitute.org/hc/en-us/articles/360035890811-Resource-bundle
yunkaig commentedon Sep 22, 2024
Hi @vyepez88,
Sorry I might not have been clear. I saw this on the documentation page:
For hg19 there is one file for indel and another for snp.
But for hg38 both files are for indels.
Is that how it is supposed to be?
Many thanks!