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208 lines (187 loc) · 5.19 KB
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[build-system]
requires = [
"scikit-build-core",
"setuptools_scm>=8.0",
"pybind11>=2.9.0",
"scipy!=1.0.0",
"cython",
"numpy>=2.0.0rc1",
]
build-backend = "scikit_build_core.build"
[project]
name = "brainiak"
description = "Brain Imaging Analysis Kit"
requires-python = ">=3.10"
readme = "README.rst"
license = { file = "LICENSE" }
authors = [
{ name = "Princeton Neuroscience Institute and Intel Corporation", email = "mihai.capota@intel.com" }
]
maintainers = [
{ name = "Mihai Capota", email = "mihai.capota@intel.com" }
]
classifiers = [
"Development Status :: 5 - Production/Stable",
"Intended Audience :: Developers",
"Intended Audience :: Information Technology",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: Apache Software License",
"Operating System :: MacOS",
"Operating System :: Microsoft :: Windows",
"Operating System :: POSIX",
"Operating System :: Unix",
"Programming Language :: C++",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: Implementation :: CPython",
"Topic :: Scientific/Engineering",
"Topic :: Scientific/Engineering :: Information Analysis",
"Topic :: Scientific/Engineering :: Mathematics",
"Topic :: Scientific/Engineering :: Medical Science Apps.",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Software Development",
"Topic :: Utilities",
"Typing :: Typed"
]
keywords = ["neuroscience", "algorithm", "fMRI", "distributed", "scalable"]
dynamic = ["version"]
dependencies = [
"numpy>=1.23.5",
"mpi4py>=3", # https://travis-ci.org/brainiak/brainiak/jobs/545838666
"nitime",
"scikit-learn>=0.18",
"scipy!=1.0.0",
"statsmodels",
"pymanopt",
"psutil",
"nibabel",
"joblib",
"wheel>=0.46.2", # See https://github.com/astropy/astropy-helpers/issues/501
"pydicom>=3.0.2",
]
[project.optional-dependencies]
dev = [
"pytest",
"coverage",
"flake8",
"flake8-print",
"mypy",
"myst-nb",
"restructuredtext-lint",
"setuptools_scm",
"sphinx",
"sphinx_rtd_theme",
"towncrier",
"numdifftools",
"testbook",
"pytest-reportlog",
]
matnormal = [
'tensorflow>=2.16',
'tensorflow_probability[tf]<=0.24.0', # Issues with TF 2.18 on intel macs (requreied by TFP 0.25)
]
examples = [
"nilearn",
"nxviz<=0.6.3",
"timecorr",
"seaborn",
"holoviews",
"pyOpenSSL>=26.0.0",
"awscli",
"bcrypt",
"indexed_gzip",
"inflect",
"ipython",
"jupyter",
"mypy",
"nibabel",
"nilearn",
"nodejs",
"numpy",
"pydicom>=3.0.2",
"requests",
"rpyc",
"scikit-learn",
"scipy>=1.6.0",
"toml",
"tornado>=6.5.5",
"websocket-client",
"wsaccel",
"inotify",
"pybids",
"watchdog"
]
all=['brainiak[dev,matnormal,examples]']
[project.urls]
Homepage = "http://brainiak.org"
Documentation = "https://brainiak.org/docs/"
"Bug Tracker" = "https://github.com/brainiak/brainiak/issues"
Changelog = "https://brainiak.org/docs/release_notes.html"
Chat = "https://gitter.im/brainiak/brainiak"
[tool.setuptools_scm]
write_to = "src/brainiak/_version.py"
[tool.scikit-build]
minimum-version = "0.4"
build-dir = "build/{wheel_tag}"
metadata.version.provider = "scikit_build_core.metadata.setuptools_scm"
sdist.include = [
"tests/io/data/*",
"src/brainiak/_version.py",
"src/brainiak/utils/sim_parameters",
]
cmake.build-type = "Release"
[tool.cibuildwheel]
test-extras = ["matnormal", "dev"]
test-command = "python -m pytest {project}/tests"
archs = ["auto64"]
skip = [
"cp313*", "cp314*", # Tensorflow wheels are not available for Python 3.13 and 3.14
"*musllinux*", # Tensorflow wheels are not available for musllinux
]
[tool.cibuildwheel.linux]
before-all = [
"yum --disablerepo=epel install -y mpich mpich-devel",
]
[tool.cibuildwheel.linux.environment]
PATH = "/usr/lib64/mpich/bin:$PATH"
LD_LIBRARY_PATH = "/usr/lib64/mpich/lib:$LD_LIBRARY_PATH"
[tool.coverage.run]
source = ["brainiak"]
branch = true
concurrency = ["multiprocessing"]
parallel = true
[tool.coverage.report]
fail_under = 90
[tool.pytest.ini_options]
addopts = "-s --durations=0"
markers = [
"notebook: marks example notebook tests",
]
[tool.towncrier]
directory = "docs/newsfragments"
package = "brainiak"
template = "docs/newsfragments/_template.jinja"
title_format = "BrainIAK {version} ({project_date})"
[[tool.towncrier.type]]
directory = "feature"
name = "Features"
showcontent = true
[[tool.towncrier.type]]
directory = "bugfix"
name = "Bugfixes"
showcontent = true
[[tool.towncrier.type]]
directory = "doc"
name = "Documentation improvements"
showcontent = true
[[tool.towncrier.type]]
directory = "removal"
name = "Deprecations and removals"
showcontent = true