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How to get nipy testdata for network-sandboxed testing #561
Description
Currently sandboxed tests fail because of missing data: https://ppb.chymera.eu/d39f86.html
I found a guide for getting nipy data, but I don't seem to get the required files.
E.g. /var/tmp/portage/sci-libs/nipy-0.6.0/homedir/.nipy/tests/data/group_t_images.tar.gz is not in:
[deco]/tmp ❱ tree nipy-templates-0.2/templates/
nipy-templates-0.2/templates/
├── colin27
│ └── 2mm
│ └── T1.nii.gz
├── config.ini
└── ICBM152
├── 1mm
│ └── T1_brain.nii.gz
└── 2mm
└── T1.nii.gz
6 directories, 4 files
[deco]/tmp ❱ tree nipy-data-0.3/data/
nipy-data-0.3/data/
├── config.ini
├── fiac
│ └── fiac0
│ ├── mask.nii.gz
│ ├── run1_design.npz
│ ├── run1.nii.gz
│ ├── run2_design.npz
│ └── run2.nii.gz
└── neurospin
├── language_babies
│ └── offset_002.npz
└── sulcal2000
├── nobias_ammon.nii.gz
└── nobias_anubis.nii.gz
6 directories, 9 files
Activity
matthew-brett commentedon Feb 20, 2024
We need to update those instructions, but a) the package versions have been updated to 0.3, and b) you need the
nipy-datapackage for that particular file. As in:TheChymera commentedon Feb 20, 2024
@matthew-brett the nipy-data I have is already 0.3, as seen in the code above. Do I have the wrong 0.3 archive, or is there a different archive I need for e.g.
group_t_images.tar.gz?matthew-brett commentedon Feb 27, 2024
Oops - so sorry - I should have read more carefully. Some of the examples are broken, because the FTP site with the relevant data went down : ftp://ftp.cea.fr/pub/dsv/madic/download/nipy - see
examples/labs/need_data/get_data_light.py. I'm afraid I have no way of getting those images now. So we're going to have to orphan those tests.TheChymera commentedon Feb 27, 2024
Is the data permanently lost, or is this something you might come across again at an indeterminate moment in the future?
I'm sure somebody must have it locally from some old tests they ran if it's been the same data for a long time.ä
If not, do you remember how it was generated?