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Commits

Commits on Jun 15, 2026
- Merge branch 'master' into avx2
  lh3
  committed
  328dea4
- Release minibwa-0.1 (r363)
  lh3
  committed
  2109737
- Merge pull request #18 from lh3/fix/eqx-cigar-n-as-mismatch
  lh3
  authored
  912c39b
- r361: output SAM by default
  lh3
  committed
  343a451
- count N as a mismatch in the =/X CIGAR
  nh13
  committed
  80c0740
Commits on Jun 12, 2026
- polish the license file
  lh3
  committed
  0f1fe68
Commits on Jun 5, 2026
- update
  lh3
  committed
  6228b7e
- added minibwa-rs
  lh3
  committed
  44b85c8
Commits on May 31, 2026
- added rammap
  lh3
  committed
  a681787
Commits on May 29, 2026
- a bit more documentation
  lh3
  committed
  06d1adb
Commits on May 27, 2026
- manuscript
  lh3
  committed
  78cd1e9
- updated bs-seq timing
  lh3
  committed
  3698dbb
- r352: heuristic to lower bs-seq mapq
  lh3
  committed
  2757adb
- r351: trigger matesw for LCR reads
  lh3
  committed
  d599bf4
Commits on May 26, 2026
- r350: fixed a bug in seed split under --meth
  lh3
  committed
  ee27d1b
- r349: resumed versioning
  lh3
  committed
  14f3b0a
- Merge branch 'meth4'
  lh3
  committed
  ed5e68d
- count N as a mismatch in mb_align_pair
  lh3
  committed
  e41830b
- removed l2b_getseq_meth
  lh3
  committed
  c058ae5
- fixed an issue in u 10000 ngapped patch by agy
  lh3
  committed
  8a90d0c
- 4-base bs-seq mate rescue
  lh3
  committed
  845dfd6
- extension in the 4-base space
  lh3
  committed
  c8ae227
- fixed a logical error; now faster
  lh3
  committed
  6ddb7e2
- simplified the logic; equivalent code
  lh3
  committed
  c29eae1
- in the meth mode, split at disallowed mismatches
  lh3
  committed
  0f53506
- address comments from Nils
  lh3
  committed
  f7fe0b0
Commits on May 25, 2026
- added strobealign+DV
  lh3
  committed
  d03aa4c
Commits on May 22, 2026
- minor
  lh3
  committed
  edee60e
- mention that ambiguous bases => random
  lh3
  committed
  659b2c3
- spell check; minor polish
  lh3
  committed
  856d935
- the first draft
  lh3
  committed
  0e2a9f3
Commits on May 21, 2026
- added plotting scripts
  lh3
  committed
  fb1d6aa
- AVX2 exact max: two-pass approach with SSE-compatible tie-breaking
  
  lh3
  and
  claude
  committed
  1215299
Commits on May 20, 2026
- Merge branch 'master' into avx2
  lh3
  committed
  be04edb
- r332: further optimization by antigravity
  lh3
  committed
  313ef54

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Commits on Jun 15, 2026

Commits on Jun 12, 2026

Commits on Jun 5, 2026

Commits on May 31, 2026

Commits on May 29, 2026

Commits on May 27, 2026

Commits on May 26, 2026

Commits on May 25, 2026

Commits on May 22, 2026

Commits on May 21, 2026

Commits on May 20, 2026