Repository navigation
Expand file tree
/
Copy pathlibsais.h
More file actions
106 lines (88 loc) · 4.11 KB
/
Copy pathlibsais.h
File metadata and controls
106 lines (88 loc) · 4.11 KB
1
2
3
4
5
6
7
8
9
10
11
8000
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
/*--
This file is a part of libsais, a library for linear time suffix array,
longest common prefix array and burrows wheeler transform construction.
Copyright (c) 2021-2025 Ilya Grebnov <ilya.grebnov@gmail.com>
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
Please see the file LICENSE for full copyright information.
--*/
#ifndef LIBSAIS_H
#define LIBSAIS_H 1
#define LIBSAIS_VERSION_MAJOR 2
#define LIBSAIS_VERSION_MINOR 10
#define LIBSAIS_VERSION_PATCH 4
#define LIBSAIS_VERSION_STRING "2.10.4"
#ifdef _WIN32
#ifdef LIBSAIS_SHARED
#ifdef LIBSAIS_EXPORTS
#define LIBSAIS_API __declspec(dllexport)
#else
#define LIBSAIS_API __declspec(dllimport)
#endif
#else
#define LIBSAIS_API
#endif
#else
#define LIBSAIS_API
#endif
#ifdef __cplusplus
extern "C" {
#endif
#include <stdint.h>
/**
* Constructs the suffix array of a given string.
* @param T [0..n-1] The input string.
* @param SA [0..n-1+fs] The output array of suffixes.
* @param n The length of the given string.
* @param fs The extra space available at the end of SA array (0 should be enough for most cases).
* @param freq [0..255] The output symbol frequency table (can be NULL).
* @return 0 if no error occurred, -1 or -2 otherwise.
*/
LIBSAIS_API int32_t libsais(const uint8_t * T, int32_t * SA, int32_t n, int32_t fs, int32_t * freq);
/**
* Constructs the suffix array of a given integer array.
* Note, during construction input array will be modified, but restored at the end if no errors occurred.
* @param T [0..n-1] The input integer array.
* @param SA [0..n-1+fs] The output array of suffixes.
* @param n The length of the integer array.
* @param k The alphabet size of the input integer array.
* @param fs Extra space available at the end of SA array (can be 0, but 4k or better 6k is recommended for optimal performance).
* @return 0 if no error occurred, -1 or -2 otherwise.
*/
LIBSAIS_API int32_t libsais_int(int32_t * T, int32_t * SA, int32_t n, int32_t k, int32_t fs);
#if defined(LIBSAIS_OPENMP)
/**
* Constructs the suffix array of a given string in parallel using OpenMP.
* @param T [0..n-1] The input string.
* @param SA [0..n-1+fs] The output array of suffixes.
* @param n The length of the given string.
* @param fs The extra space available at the end of SA array (0 should be enough for most cases).
* @param freq [0..255] The output symbol frequency table (can be NULL).
* @param threads The number of OpenMP threads to use (can be 0 for OpenMP default).
* @return 0 if no error occurred, -1 or -2 otherwise.
*/
LIBSAIS_API int32_t libsais_omp(const uint8_t * T, int32_t * SA, int32_t n, int32_t fs, int32_t * freq, int32_t threads);
/**
* Constructs the suffix array of a given integer array in parallel using OpenMP.
* Note, during construction input array will be modified, but restored at the end if no errors occurred.
* @param T [0..n-1] The input integer array.
* @param SA [0..n-1+fs] The output array of suffixes.
* @param n The length of the integer array.
* @param k The alphabet size of the input integer array.
* @param fs Extra space available at the end of SA array (can be 0, but 4k or better 6k is recommended for optimal performance).
* @param threads The number of OpenMP threads to use (can be 0 for OpenMP default).
* @return 0 if no error occurred, -1 or -2 otherwise.
*/
LIBSAIS_API int32_t libsais_int_omp(int32_t * T, int32_t * SA, int32_t n, int32_t k, int32_t fs, int32_t threads);
#endif
#ifdef __cplusplus
}
#endif
#endif