8000 Update nf-test files · Issue #162 · nf-core/metapep · GitHub
[go: up one dir, main page]

Skip to content

Update nf-test files #162

Open
Open

Description

@SusiJo

The way that nf-test is implemented in the dev branch is not using the full functionality of the nf-test framework.
Only a subset of files is being checked for their md5sums and for existence.

In the future, the nf-test files should list all files that are generated by the pipeline and their software versions and only test for md5sums of stable files.

For the 4 profiles test_all, test_mouse, test_taxa_specific_assembly, test_taxa_only that download data from NCBI/Entrez, one should update the input files for the test profiles such that they use the testdata with assembly ids: i.e. https://github.com/nf-core/test-datasets/blob/metapep/testdata/taxids_assemblyids.cond1.tsv instead of https://github.com/nf-core/test-datasets/blob/metapep/testdata/taxids.cond1.tsv.

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions

      0