8000 Implementation of `csvkit` for stream merging csv · Issue #136 · nf-core/metapep · GitHub
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Implementation of csvkit for stream merging csv #136

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@tillenglert

Description of feature

Currently some processes, like MERGE_PREDICTIONS use a custom concat_tsv.py script enabling streamed merging of many cvs, as prediction tables tend to get very large and multiple 100ed files are concatenated.

To reduce maintenance load we could implement an nf-core module for:
https://csvkit.readthedocs.io/en/latest/contributing.html#streaming-versus-buffering

Activity

  1. changed the title [-]Implementation of `csvkit` for stream merging css[/-] [+]Implementation of `csvkit` for stream merging csv[/+] on Sep 30, 2024
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