8000 mcCellpose incompatiable with Coreograph outputs. · Issue #143 · nf-core/mcmicro · GitHub
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mcCellpose incompatiable with Coreograph outputs. #143

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mcCellpose incompatiable with Coreograph outputs.#143

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@adamjtaylor
adamjtaylor
opened on Feb 3, 2026

mcCellpose extracts pixels size from the OME-XML of the input. As Coreograph outputs tif images this fails when passed to mccellpose

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