8000 Look into making coreograph output mask/ROIs rather than physically splitting image · Issue #145 · nf-core/mcmicro · GitHub
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Look into making coreograph output mask/ROIs rather than physically splitting image #145

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@jmuhlich

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Coreograph's output is fragile enough that it might be better to store its output as a non-destructive mask or list of shapes which can be used in downstream analysis after single-cell quantification. One reason for physically splitting cores was to reduce RAM usage for segmentation and quantification as well as improve parallelism, but our tools are improving in these areas.

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