minia/test at v0.0.102 · GATB/minia

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Name		Name	Last commit message	Last commit date
parent directory ..
10k_test.sh		10k_test.sh
1seq.fa		1seq.fa
1seq_90bp.fa		1seq_90bp.fa
1seq_90bp.reads.fq		1seq_90bp.reads.fq
1seq_90bp_circ.fa		1seq_90bp_circ.fa
1seq_90bp_simulate_reads.sh		1seq_90bp_simulate_reads.sh
ERR039477.md5		ERR039477.md5
ERR039477.md5-gcc47		ERR039477.md5-gcc47
README		README
X.fa		X.fa
X.solution.fa		X.solution.fa
bubble.fa		bubble.fa
bubble.solution.fa		bubble.solution.fa
bubble_covmult0.5.fa		bubble_covmult0.5.fa
buchnera.fasta		buchnera.fasta
buchnera_simulate_reads.sh		buchnera_simulate_reads.sh
buchnera_test.sh		buchnera_test.sh
compare_fasta.py		compare_fasta.py
ec.fa		ec.fa
ec.solution.fa		ec.solution.fa
genome10K.fasta		genome10K.fasta
high_abundance.fa		high_abundance.fa
read50x_ref10K_e001.fa		read50x_ref10K_e001.fa
simple_test.sh		simple_test.sh
test_ERR039477.sh		test_ERR039477.sh
tip.fa		tip.fa
tip.solution.fa		tip.solution.fa

README

Those .sh scripts don't really say OK/NOT OK, you have to inspect the result yourself, but it's quite intuitive:

10k_test should assemble into 1 sequence
X remains an X
bubble becomes popped
tip becomes clipped

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