Repository navigation
Expand file tree
/
Copy pathsetup.py
More file actions
144 lines (128 loc) · 3.42 KB
/
Copy pathsetup.py
File metadata and controls
144 lines (128 loc) · 3.42 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
from distutils import sysconfig
from setuptools import setup, Extension, find_packages
from setuptools.command.build_ext import build_ext
import os
import site
import sys
import setuptools
from copy import deepcopy
assert sys.version_info >= (3, 5), (
"Please use Python version 3.5 or higher, "
"lower versions are not supported"
)
# https://github.com/pypa/pip/issues/7953#issuecomment-645133255
site.ENABLE_USER_SITE = "--user" in sys.argv[1:]
ext_modules = [
Extension(
'brainiak.factoranalysis.tfa_extension',
['brainiak/factoranalysis/tfa_extension.cpp'],
),
Extension(
'brainiak.fcma.fcma_extension',
['brainiak/fcma/src/fcma_extension.cc'],
),
Extension(
'brainiak.fcma.cython_blas',
['brainiak/fcma/cython_blas.pyx'],
),
Extension(
'brainiak.eventseg._utils',
['brainiak/eventseg/_utils.pyx'],
),
]
class BuildExt(build_ext):
"""A custom build extension for adding compiler-specific options."""
c_opts = {
'unix': ['-g0', '-fopenmp'],
}
# FIXME Workaround for using the Intel compiler by setting the CC env var
# Other uses of ICC (e.g., cc binary linked to icc) are not supported
if (('CC' in os.environ and 'icc' in os.environ['CC'])
or (sysconfig.get_config_var('CC') and 'icc' in sysconfig.get_config_var('CC'))):
c_opts['unix'] += ['-lirc', '-lintlc']
if sys.platform == 'darwin':
c_opts['unix'] += ['-stdlib=libc++', '-mmacosx-version-min=10.9',
'-ftemplate-depth-1024']
def build_extensions(self):
ct = self.compiler.compiler_type
opts = self.c_opts.get(ct, [])
if ct == 'unix':
opts.append('-DVERSION_INFO="%s"' %
self.distribution.get_version())
for ext in self.extensions:
ext.extra_compile_args = deepcopy(opts)
ext.extra_link_args = deepcopy(opts)
lang = ext.language or self.compiler.detect_language(ext.sources)
if lang == 'c++':
ext.extra_compile_args.append("-std=c++11")
ext.extra_link_args.append("-std=c++11")
build_ext.build_extensions(self)
def finalize_options(self):
super().finalize_options()
import numpy
import pybind11
self.include_dirs.extend([
numpy.get_include(),
pybind11.get_include(user=True),
pybind11.get_include(),
])
extras = {
"dev": [
"pytest",
"coverage",
"flake8",
"flake8-print",
"mypy",
"myst-nb",
"restructuredtext-lint",
"setuptools_scm",
"sphinx",
"sphinx_rtd_theme",
"towncrier",
"numdifftools",
"testbook"
],
'matnormal': [
'tensorflow<=2.12.0',
'tensorflow_probability<=0.15.0',
],
# All requirements for notebook examples in docs/examples
"examples": [
"nilearn",
"nxviz<=0.6.3",
"nltools",
"timecorr",
"seaborn",
"holoviews",
"pyOpenSSL",
"awscli",
"bcrypt",
"indexed_gzip",
"inflect",
"ipython",
"jupyter",
"mypy",
"nibabel",
"nilearn",
"nodejs",
"numpy",
"pydicom",
"requests",
"rpyc",
"scikit-learn",
"scipy",
"toml",
"tornado",
"websocket-client",
"wsaccel",
"inotify",
"pybids",
"watchdog"
],
}
extras["all"] = sum(extras.values(), [])
setup(
extras_require=extras,
ext_modules=ext_modules,
cmdclass={'build_ext': BuildExt},
)