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Copy pathCMakeLists.txt
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project(minia)
cmake_minimum_required (VERSION 2.6)
################################################################################
# The version number.
################################################################################
# The default version number is the latest official build
SET (gatb-tool_VERSION_MAJOR 3)
SET (gatb-tool_VERSION_MINOR 2)
SET (gatb-tool_VERSION_PATCH 5)
# But, it is possible to define another release number during a local build
IF (DEFINED MAJOR)
SET (gatb-tool_VERSION_MAJOR ${MAJOR})
ENDIF()
IF (DEFINED MINOR)
SET (gatb-tool_VERSION_MINOR ${MINOR})
ENDIF()
IF (DEFINED PATCH)
SET (gatb-tool_VERSION_PATCH ${PATCH})
ENDIF()
set (gatb-tool-version ${gatb-tool_VERSION_MAJOR}.${gatb-tool_VERSION_MINOR}.${gatb-tool_VERSION_PATCH})
# However, continuous integration has priority over local compilation
IF (DEFINED JENKINS_TAG)
SET (gatb-tool-version ${JENKINS_TAG})
ENDIF()
#############################
# getting git version
#from http://stackoverflow.com/questions/1435953/how-can-i-pass-git-sha1-to-compiler-as-definition-using-cmake
exec_program(
"git"
${CMAKE_CURRENT_SOURCE_DIR}
ARGS "rev-parse --short HEAD"
OUTPUT_VARIABLE VERSION_SHA1 )
if ( VERSION_SHA1 MATCHES "^[0-9a-f]+$") # might return "git commit fatal: not a git repository"
message("Git version: ${VERSION_SHA1}")
add_definitions( -DGIT_SHA1="${VERSION_SHA1}" )
endif()
################################################################################
# Define cmake modules directory
################################################################################
SET (GATB_CORE_HOME ${PROJECT_SOURCE_DIR}/thirdparty/gatb-core/gatb-core)
SET (CMAKE_MODULE_PATH ${GATB_CORE_HOME}/cmake)
################################################################################
# SUPPORTED KMER SIZES
################################################################################
# One can uncomment this line and set the wanted values
#set (KSIZE_LIST "32 64 96 128 160 192 224 256")
# by default, it's compiling up to 128.
################################################################################
# THIRD PARTIES
################################################################################
# We don't want to install some GATB-CORE artifacts
SET (GATB_CORE_EXCLUDE_TOOLS 1)
SET (GATB_CORE_EXCLUDE_TESTS 1)
SET (GATB_CORE_EXCLUDE_EXAMPLES 1)
# GATB CORE
include (GatbCore)
################################################################################
# TOOL
################################################################################
# We add the compilation options for the library
add_definitions (${gatb-core-flags})
# We add the gatb-core include directory
include_directories (${gatb-core-includes})
# We add the path for extra libraries
link_directories (${gatb-core-extra-libraries-path})
set (PROGRAM_SOURCE_DIR ${PROJECT_SOURCE_DIR}/src)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
cmake_policy(SET CMP0009 NEW) # fixes cmake complaining about symlinks
include_directories (${PROGRAM_SOURCE_DIR})
file (GLOB_RECURSE ProjectFiles ${PROGRAM_SOURCE_DIR}/*)
add_executable(${PROJECT_NAME} ${ProjectFiles})
target_link_libraries(${PROJECT_NAME} ${gatb-core-libraries})
# merci
set (MERCI_SOURCE_DIR ${PROJECT_SOURCE_DIR}/merci)
include_directories (${MERCI_SOURCE_DIR})
file (GLOB_RECURSE MerciFiles ${MERCI_SOURCE_DIR}/*.cpp)
add_executable("merci" ${MerciFiles})
target_link_libraries("merci" ${gatb-core-libraries})
# that file will hold the version information as a #define
configure_file (
${PROJECT_SOURCE_DIR}/src/build_info.hpp.in
${PROJECT_SOURCE_DIR}/src/build_info.hpp
)
################################################################################
# DOC
################################################################################
set (SKIP_DOC 1)
if (NOT DEFINED SKIP_DOC)
add_subdirectory (doc)
endif()
################################################################################
# PACKAGING
################################################################################
# We set the version number
SET (CPACK_PACKAGE_DESCRIPTION_SUMMARY "gatb-tool ${PROJECT_NAME}")
SET (CPACK_PACKAGE_VENDOR "Genscale team (INRIA)")
SET (CPACK_PACKAGE_VERSION_MAJOR "${gatb-tool_VERSION_MAJOR}")
SET (CPACK_PACKAGE_VERSION_MINOR "${gatb-tool_VERSION_MINOR}")
SET (CPACK_PACKAGE_VERSION_PATCH "${gatb-tool_VERSION_PATCH}")
SET (CPACK_PACKAGE_VERSION "${gatb-tool-version}")
# We set the kind of archive
SET (CPACK_GENERATOR "TGZ")
SET (CPACK_SOURCE_GENERATOR "TGZ")
# We ignore unwanted files for the source archive
SET (CPACK_SOURCE_IGNORE_FILES
"^${PROJECT_SOURCE_DIR}/\\.git/" ;
"^${PROJECT_SOURCE_DIR}/\\.gitmodules" ;
"^${PROJECT_SOURCE_DIR}/\\.gitignore" ;
"^${PROJECT_SOURCE_DIR}/build/" ;
"^${GATB_CORE_HOME}/\\.cproject" ;
"^${GATB_CORE_HOME}/\\.git/" ;
"^${GATB_CORE_HOME}/\\.project" ;
"^${GATB_CORE_HOME}/\\.gitignore"
)
# We copy the project binary to the 'bin' directory
INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)
INSTALL (DIRECTORY "${PROJECT_SOURCE_DIR}/test/" DESTINATION test)
INSTALL (FILES LICENSE README.md DESTINATION bin/..)
# We include the "bin" tag into binary archive file name
set (CPACK_PACKAGE_FILE_NAME ${PROJECT_NAME}-${CPACK_PACKAGE_VERSION}-bin-${CMAKE_SYSTEM_NAME})
include (CPack)