minia/test/bubble.fa at v3.2.3 · GATB/minia

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>works well for k=21; part of genome10K.fasta

CATCGATGCGAGACGCCTGTCGCGGGGAATTGTGGGGCGGACCACGCTCTGGCTAACGAGCTACCGTTTCCTTTAACCTGCCAGACGGTGACCAGGGCCGTTCGGCGTTGCATCGAGCGGTGTCGCTAGCGCAATGCGCAAGATTTTGACATTTACAAGGCAACATTGCAGCGTCCGATGGTCCGGTGGCCTCCAGATAGTGTCCAGTCGCTCTAACTGTATGGAGACCATAGGCATTTACCTTATTCTCATCGCCACGCCCCAAGATCTTTAGGACCCAGCATTCCTTTAACCACTAACATAACGCGTGTCATCTAGTTCAACAACC

>that's the bubble (highly covered)

TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT

>that's the bubble

TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT

>that's the bubble

TGTCATCTAGTTCAACAACCAAAATAACGACTCTTGCGCTCGGATGT

>that's the bubble path 2, low covered

TGTCATCTAGTTCAACAACCAAAAAAACGACTCTTGCGCTCGGATGT

>remaining part

CGACTCTTGCGCTCGGATGTCCGCAATGGGTTATCCCTATGTTCCGGTAATCTCTCATCTACTAAGCGCCCTAAAGGTCGTATGGTTGGAGGGCGGTTACACACCCTTAAGTACCGAACGATAGAGCACCCGTCTAGGAGGGCGTGCAGGGTCTCCCGCTAGCTAATGGTCACGGCCTCTCTGGGAAAGCTGAACAACGGATGATACCCATACTGCCACTCCAGTACCTGGGCCGCGTGTTGTACGCTGTGTATCTTGAGAGCGTTTCCAGCAGATAGAACAGGATCACATGTACAAA

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