8000 minia/test/buchnera_test.sh at v3.2.0 · GATB/minia · GitHub

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file=buchnera

k=22

../build/minia -in buchnera -abundance-min 2 -kmer-size $k

echo "tigops, bandage:"

echo "../../tigops/build/tigops fasta2fastg -tigs "$file".contigs.fa -out "$file".contigs.fastg -kmer-size $k -rename"

echo "~/tools/bandage/Bandage/Bandage $file.contigs.fastg"

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