Repository navigation
Expand file tree
/
Copy pathCMakeLists.txt
More file actions
140 lines (112 loc) · 4.99 KB
/
Copy pathCMakeLists.txt
File metadata and controls
140 lines (112 loc) · 4.99 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
project(minia)
cmake_minimum_required (VERSION 2.6)
################################################################################
# The version number.
################################################################################
# The default version number is the latest official build
SET (gatb-tool_VERSION_MAJOR 3)
SET (gatb-tool_VERSION_MINOR 2)
SET (gatb-tool_VERSION_PATCH 0)
# But, it is possible to define another release number during a local build
IF (DEFINED MAJOR)
SET (gatb-tool_VERSION_MAJOR ${MAJOR})
ENDIF()
IF (DEFINED MINOR)
SET (gatb-tool_VERSION_MINOR ${MINOR})
ENDIF()
IF (DEFINED PATCH)
SET (gatb-tool_VERSION_PATCH ${PATCH})
ENDIF()
set (gatb-tool-version ${gatb-tool_VERSION_MAJOR}.${gatb-tool_VERSION_MINOR}.${gatb-tool_VERSION_PATCH})
# However, continuous integration has priority over local compilation
IF (DEFINED JENKINS_TAG)
SET (gatb-tool-version ${JENKINS_TAG})
ENDIF()
#############################
# getting git version
#from http://stackoverflow.com/questions/1435953/how-can-i-pass-git-sha1-to-compiler-as-definition-using-cmake
exec_program(
"git"
${CMAKE_CURRENT_SOURCE_DIR}
ARGS "rev-parse --short HEAD"
OUTPUT_VARIABLE VERSION_SHA1 )
add_definitions( -DGIT_SHA1="${VERSION_SHA1}" )
################################################################################
# Define cmake modules directory
################################################################################
SET (GATB_CORE_HOME ${PROJECT_SOURCE_DIR}/thirdparty/gatb-core/gatb-core)
SET (CMAKE_MODULE_PATH ${GATB_CORE_HOME}/cmake)
################################################################################
# SUPPORTED KMER SIZES
################################################################################
# One can uncomment this line and set the wanted values
#set (KSIZE_LIST "32 64 96 128 160 192 224 256")
# by default, it's compiling up to 128.
################################################################################
# THIRD PARTIES
################################################################################
# We don't want to install some GATB-CORE artifacts
SET (GATB_CORE_EXCLUDE_TOOLS 1)
SET (GATB_CORE_EXCLUDE_TESTS 1)
SET (GATB_CORE_EXCLUDE_EXAMPLES 1)
# GATB CORE
include (GatbCore)
################################################################################
# TOOL
################################################################################
# We add the compilation options for the library
add_definitions (${gatb-core-flags})
# We add the gatb-core include directory
include_directories (${gatb-core-includes})
# We add the path for extra libraries
link_directories (${gatb-core-extra-libraries-path})
set (PROGRAM_SOURCE_DIR ${PROJECT_SOURCE_DIR}/src)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
include_directories (${PROGRAM_SOURCE_DIR})
file (GLOB_RECURSE ProjectFiles ${PROGRAM_SOURCE_DIR}/*)
add_executable(${PROJECT_NAME} ${ProjectFiles})
target_link_librar
64BA
ies(${PROJECT_NAME} ${gatb-core-libraries})
# merci
set (MERCI_SOURCE_DIR ${PROJECT_SOURCE_DIR}/merci)
include_directories (${MERCI_SOURCE_DIR})
file (GLOB_RECURSE MerciFiles ${MERCI_SOURCE_DIR}/*.cpp)
add_executable("merci" ${MerciFiles})
target_link_libraries("merci" ${gatb-core-libraries})
################################################################################
# DOC
################################################################################
set (SKIP_DOC 1)
if (NOT DEFINED SKIP_DOC)
add_subdirectory (doc)
endif()
################################################################################
# PACKAGING
################################################################################
# We set the version number
SET (CPACK_PACKAGE_DESCRIPTION_SUMMARY "gatb-tool ${PROJECT_NAME}")
SET (CPACK_PACKAGE_VENDOR "Genscale team (INRIA)")
SET (CPACK_PACKAGE_VERSION_MAJOR "${gatb-tool_VERSION_MAJOR}")
SET (CPACK_PACKAGE_VERSION_MINOR "${gatb-tool_VERSION_MINOR}")
SET (CPACK_PACKAGE_VERSION_PATCH "${gatb-tool_VERSION_PATCH}")
SET (CPACK_PACKAGE_VERSION "${gatb-tool-version}")
# We set the kind of archive
SET (CPACK_GENERATOR "TGZ")
SET (CPACK_SOURCE_GENERATOR "TGZ")
# We ignore unwanted files for the source archive
SET (CPACK_SOURCE_IGNORE_FILES
"^${PROJECT_SOURCE_DIR}/\\.git/" ;
"^${PROJECT_SOURCE_DIR}/\\.gitmodules" ;
"^${PROJECT_SOURCE_DIR}/\\.gitignore" ;
"^${PROJECT_SOURCE_DIR}/build/" ;
"^${GATB_CORE_HOME}/\\.cproject" ;
"^${GATB_CORE_HOME}/\\.git/" ;
"^${GATB_CORE_HOME}/\\.project" ;
"^${GATB_CORE_HOME}/\\.gitignore"
)
# We copy the project binary to the 'bin' directory
INSTALL (TARGETS ${PROJECT_NAME} DESTINATION bin)
INSTALL (DIRECTORY "${PROJECT_SOURCE_DIR}/test/" DESTINATION test)
INSTALL (FILES LICENSE README.md DESTINATION bin/..)
# We include the "bin" tag into binary archive file name
set (CPACK_PACKAGE_FILE_NAME ${PROJECT_NAME}-${CPACK_PACKAGE_VERSION}-bin-${CMAKE_SYSTEM_NAME})
include (CPack)