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Commits on Oct 14, 2026
- Merge pull request #53 from steineggerlab/dev
  khb7840
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  3e193e3
- Merge pull request #54 from khb7840/dev
  khb7840
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  5928310
- README update
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  226bc23
Commits on Sep 18, 2026
- Merge pull request #52 from khb7840/feature-integration
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  10d3288
- docs: ship the 3.0 report as a PDF and point benchmarks at folddisco-analysis
  
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- docs: point v3 report at its page source and PDF generator
  
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- feat: novelty mode reports KNOWN/PARTIAL/NOVEL with the best hit's residues
  
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- fix: point the chain-mismatch message at the separator
  
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Commits on Sep 17, 2026
- docs: v3 report with the final benchmark numbers
  
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- docs: record the motif trade-off behind structure_score
  
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- feat: rank by match_score and structure_score by default
  
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- fix: --confident requires only coverage past 12 residues
  
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- feat: --confident preset and coverage-weighted default sort
  
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- docs: index-time expansion numbers from the final binary
  
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- docs: record neighbouring-bin scoring and index-time expansion results
  
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- feat: score neighbouring-bin edges only between matched residues
  
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- docs: add changelog for 3.0.0
  
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- chore: bump version to 3.0.0
  
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- docs: record the substitution benchmark and scoring selection
  
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- feat: substitution-aware scoring for --aa-subst and :*
  
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- refactor: rename --nonrigid to --sensitive
  
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- fix: build and test without the foldcomp feature
  
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Commits on Sep 15, 2026
- feat: add update report and feature evaluation documentation
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- Merge branch 'feature-temp' into feature-integration
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- Temporary update for debugging
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- docs: trim comments and reports, document new query and index options
  
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- feat: evidence-based novelty mode, amino acid substitution schemes, index-time expansion
  
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- fix: restore compiling tests, chain-prefixed range ends, and substituted-residue matching
  
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Commits on Sep 2, 2026
- Merged multichar chainID & nonrigid search
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- Minor fix
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  f8894d4
- Merge branch 'widen-chain-ids-compat' into feature-integration
  khb7840
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  18f1bd9
Commits on Aug 27, 2026

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Commits on Aug 27, 2026