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Commits on Oct 2, 2026
- Initialise applyByModule (#825)
  
  Giulio Benedetti
  and
  TuomasBorman
  authored
  b78e622
Commits on Sep 25, 2026
- Support UniFrac and pre-calculated dissimilarity in getPERMANOVA (#844) (#846)
  
  0xMuluh
  and
  TuomasBorman
  authored
  2cba739
Commits on Sep 24, 2026
- Add rank support to getTop (#799)
  
  0xMuluh
  and
  TuomasBorman
  authored
  e425d95
- Update documents and namespace
  TuomasBorman
  committed
  416de1c
Commits on Sep 23, 2026
- Clarify study subjects in ADHD microbiota profiles (#828)
  
  Giulio Benedetti
  and
  TuomasBorman
  authored
  859de8c
- Add Rdpack references (#797)
  
  0xMuluh
  and
  TuomasBorman
  authored
  751d24e
Commits on Sep 22, 2026
- Convert MAE to TreeSE and back (#810)
  
  TuomasBorman
  and
  0xMuluh
  authored
  3c4fd9e
Commits on Aug 4, 2026
- Add unit tests for RPCA (#841)
  TuomasBorman
  authored
  0daba06
Commits on Jul 31, 2026
- Tidy ibdmdb data (#838)
  TuomasBorman
  authored
  25fa7bb
Commits on Jul 30, 2026
- Make formula parsing more robust (#840)
  TuomasBorman
  authored
  af684cb
- Filter RPCAInput (#837)
  
  sabujcb
  and
  TuomasBorman
  authored
  b7072b9
- Disable deploying documentation from PR (#835)
  
  sabujcb
  and
  TuomasBorman
  authored
  2ac01c9
- Update package loading message (#839)
  TuomasBorman
  authored
  f1a03ac
Commits on Jul 29, 2026
- Striped Unifrac C++ implementation (#829)
  
  authored
  e5b393f
Commits on Jun 16, 2026
- Add Sabuj (#832)
  TuomasBorman
  authored
  fcd0741
- Fix joint rpca handling (#831)
  
  sabujcb
  and
  TuomasBorman
  authored
  8246e29
Commits on May 31, 2026
- Generalise agglomerateByModule to non-binary numerical modules (#824)
  
  Giulio Benedetti
  and
  TuomasBorman
  authored
  ded155a
Commits on May 15, 2026
- Fixed PC explained vars in joint-RPCA (#826)
  
  antagomir
  and
  TuomasBorman
  authored
  fafaeb5
Commits on Apr 28, 2026
- bump x.y.z version to odd y following creation of RELEASE_3_23 branch
  jwokaty
  committed
  78047df
- bump x.y.z version to even y prior to creation of RELEASE_3_23 branch
  jwokaty
  committed
  5c52652
Commits on Apr 17, 2026
- Patch: Shift to mia version of scuttle function to aggregate rows by group (#820)
  
  Giulio Benedetti
  and
  TuomasBorman
  authored
  f81d66a
Commits on Mar 26, 2026
- Pseudocount (#812)
  antagomir
  authored
  997852c
Commits on Mar 23, 2026
- Extended author info for JointRPCA (#811)
  antagomir
  authored
  3dd0ded
Commits on Mar 16, 2026
- Improve Joint-RPCA (#808)
  
  TuomasBorman
  and
  0xMuluh
  authored
  abff00d
Commits on Mar 6, 2026
- Add support for ordination results in clustering (#809)
  TuomasBorman
  authored
  e9190ad
Commits on Feb 25, 2026
- Add Joint-RPCA to mia: methods, tests (#804)
  
  authored
  8157c60
Commits on Feb 23, 2026
- Feat/binning transformation (#801)
  
  raivo-otus
  and
  TuomasBorman
  authored
  915e796
Commits on Feb 9, 2026
- chore: add ORCID (#803)
  artur-sannikov
  authored
  a6230da
Commits on Jan 12, 2026
- Msg (#796)
  0xMuluh
  authored
  7a18e5d
Commits on Dec 9, 2025
- Change unifrac implementation from rbiom to ecodive (#786)
  
  authored
  3645a0c
Commits on Dec 8, 2025
- update desc (#772)
  
  authored
  9514328
- Fix typos in documentation for Double Principal Correspondence analysis: "Correspondance" → "Correspondence" (#792)
  
  hindrek
  and
  TuomasBorman
  committed
  26eec84
- :memo: docs: add vegan 2.7-1 requirement for rCLR and rAitchison (#758)
  
  mm-hak
  and
  TuomasBorman
  committed
  b8a4fbf
- Fixes issue 767 (#793)
  TuomasBorman
  committed
  74c5c98
- update mia_logo (#784)
  
  0xMuluh
  authored and
  TuomasBorman
  committed
  ffc3129

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Commits on Dec 8, 2025