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Package: glmmTMB
Title: Generalized Linear Mixed Models using Template Model Builder
Version: 1.1.15.9001
Authors@R: c(person("Mollie","Brooks",
comment=c(ORCID="0000-0001-6963-8326"),
role = c("aut", "cre"),
email = "mollieebrooks@gmail.com"),
person("Ben","Bolker", role="aut",
comment=c(ORCID="0000-0002-2127-0443")),
person("Kasper","Kristensen",role="aut"),
person("Martin","Maechler", role="aut",
comment=c(ORCID="0000-0002-8685-9910")),
person("Arni","Magnusson", role="aut",
comment=c(ORCID="0000-0003-2769-6741")),
person("Maeve","McGillycuddy", role="ctb"),
person("Hans","Skaug",role="aut",
comment=c(ORCID="0000-0003-4235-2592")),
person("Anders","Nielsen", role="aut",
comment=c(ORCID="0000-0001-9683-9262")),
person("Casper","Berg", role="aut",
comment=c(ORCID="0000-0002-3812-5269")),
person("Koen","van Bentham", role="aut"),
person("Nafis","Sadat",role="ctb",
comment=c(ORCID="0000-0001-5715-616X")),
person("Daniel","Lüdecke", role="ctb",
comment=c(ORCID="0000-0002-8895-3206")),
person("Russ","Lenth", role="ctb"),
person("Joseph", "O'Brien", role = "ctb",
comment = c(ORCID = "0000-0001-9851-5077")),
person("Charles J.","Geyer", role="ctb"),
person("Mikael","Jagan", role="ctb",
comment = c(ORCID = "0000-0002-3542-2938")),
person("Brenton", "Wiernik", role="ctb",
comment = c(ORCID = "0000-0001-9560-6336")),
person("Daniel B.", "Stouffer", role="ctb",
comment = c(ORCID = "0000-0001-9436-9674")),
person("Michael", "Agronah", role = "ctb",
comment = c(ORCID = "0009-0007-2655-4094")),
person("Hatice Tül Kübra", "Akdur", role = "ctb",
comment = c(ORCID = "0000-0003-2144-0518")),
person("Daniel", "Sabanés Bové", role = "ctb",
comment = c(ORCID = "0000-0002-0176-9239")),
person("Nikolas", "Krieger", role = "ctb",
comment = c(ORCID = "0000-0002-4581-3545")),
person("Coralie", "Williams", role = "ctb",
comment = c(ORCID = "0000-0003-1312-4953")),
person("Julius", "Bogomolovas", role = "ctb",
comment = c(ORCID = "0000-0001-8344-1909"))
)
Description: Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
License: AGPL-3
Depends: R (>= 3.6.0)
Imports:
methods,
RTMB,
TMB (>= 1.9.23),
lme4 (>= 1.1-18.9000),
Matrix,
nlme,
numDeriv,
mgcv,
reformulas (>= 0.4.3.1),
pbkrtest,
sandwich
LinkingTo: TMB, RcppEigen
Suggests:
knitr,
rmarkdown,
testthat,
withr,
MASS,
ordinal,
lattice,
ggplot2 (>= 2.2.1),
mlmRev,
bbmle (>= 1.0.19),
pscl,
coda,
reshape2,
car (>= 3.0.6),
emmeans (>= 1.4),
estimability,
DHARMa,
multcomp,
MuMIn,
effects (>= 4.0-1),
dotwhisker,
broom,
broom.mixed,
plyr,
png,
boot,
texreg,
xtable,
huxtable,
parallel,
blme,
purrr,
dplyr,
ade4,
ape,
gsl,
lmerTest,
metafor
SystemRequirements: GNU make
VignetteBuilder: knitr, rmarkdown
URL: https://github.com/glmmTMB/glmmTMB
LazyData: TRUE
BugReports: https://github.com/glmmTMB/glmmTMB/issues
NeedsCompilation: yes
Encoding: UTF-8
Config/roxygen2/version: 8.1.0