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Commits on Sep 16, 2025
- Update README.md
  emvcaest
  authored
  0a64182
Commits on Feb 6, 2025
- Merge pull request #12 from CobiontID/conda
  gq1
  authored
  4abf6ff
- update readme
  gq1
  committed
  3dd394a
- wrong default branch name
  gq1
  committed
  bbd7381
Commits on Feb 5, 2025
- update workflow to build Docker from current checkout
  gq1
  committed
  dec1b39
- Remove conda defaults channel and add python 3.9 for hifiasm env
  gq1
  committed
  26536fc
- update workflow to build Docker image
  gq1
  committed
  ea41b88
- use miniforge to install snakemake
  gq1
  committed
  baff618
Commits on Jan 29, 2025
- Merge pull request #11 from muffato/main
  gq1
  authored
  c2ce2aa
Commits on Jul 11, 2024
- Added a licence
  muffato
  committed
  21276be
Commits on Feb 26, 2024
- Change outputname hifiasm run gfa
  emvcaest
  committed
  fa16011
Commits on Feb 20, 2024
- Update hifiasm version
  emvcaest
  committed
  715ce37
- Update hifiasm version
  emvcaest
  committed
  d8a13a9
Commits on Feb 19, 2024
- Update hifiasm version
  emvcaest
  committed
  f4a88f4
- Change minimap settings map-pb to map-hifi
  emvcaest
  committed
  e78589c
Commits on Feb 27, 2023
- Gzip fasta + datestamp silva + busco reads
  emvcaest
  committed
  fcfb4e7
Commits on Feb 23, 2023
- Bug start NCBI taxonomy download
  emvcaest
  committed
  2cab3a4
Commits on Feb 17, 2023
- bug silva download
  emvcaest
  committed
  fcbeba7
Commits on Feb 14, 2023
- gzip kraken.tax.masked.ffn
  emvcaest
  committed
  359d092
- bugfix #2 assembly read count
  emvcaest
  committed
  1843418
Commits on Feb 13, 2023
- bugfix mapped reads
  emvcaest
  committed
  3125900
- Calculate reads mapping re-assembly
  emvcaest
  committed
  ca629b6
- Remove circos step from pipeline
  emvcaest
  committed
  7e4f413
Commits on Feb 9, 2023
- Replace ProkSSU by SSU in filename
  emvcaest
  committed
  7506424
- bug fixes - renaming putative
  emvcaest
  committed
  3bb471f
Commits on Feb 8, 2023
- Threads_max & rename putative files
  emvcaest
  committed
  8dfb6b5
- Update README.md
  emvcaest
  authored
  3a88ae3
- Update README.md
  emvcaest
  authored
  a1f95b4
- Update README.md
  emvcaest
  authored
  a257341
- Update README.md
  emvcaest
  authored
  ad770e1
Commits on Feb 6, 2023
- fix bug busco summary
  emvcaest
  committed
  ce64ae8
- update ubuntu
  emvcaest
  committed
  f144ea0
- update ubuntu
  emvcaest
  committed
  c5d6ce0
- Retain busco summary file & no limit re-assembly
  emvcaest
  committed
  ce50c13
Commits on Feb 1, 2023
- Reduce config yaml by usage workflow.basedir
  emvcaest
  committed
  4fcb8b5

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Commits on Sep 16, 2025

Commits on Feb 6, 2025

Commits on Feb 5, 2025

Commits on Jan 29, 2025

Commits on Jul 11, 2024

Commits on Feb 26, 2024

Commits on Feb 20, 2024

Commits on Feb 19, 2024

Commits on Feb 27, 2023

Commits on Feb 23, 2023

Commits on Feb 17, 2023

Commits on Feb 14, 2023

Commits on Feb 13, 2023

Commits on Feb 9, 2023

Commits on Feb 8, 2023

Commits on Feb 6, 2023

Commits on Feb 1, 2023